Package: Spectrum 1.1
Spectrum: Fast Adaptive Spectral Clustering for Single and Multi-View Data
A self-tuning spectral clustering method for single or multi-view data. 'Spectrum' uses a new type of adaptive density aware kernel that strengthens connections in the graph based on common nearest neighbours. It uses a tensor product graph data integration and diffusion procedure to integrate different data sources and reduce noise. 'Spectrum' uses either the eigengap or multimodality gap heuristics to determine the number of clusters. The method is sufficiently flexible so that a wide range of Gaussian and non-Gaussian structures can be clustered with automatic selection of K.
Authors:
Spectrum_1.1.tar.gz
Spectrum_1.1.zip(r-4.5)Spectrum_1.1.zip(r-4.4)Spectrum_1.1.zip(r-4.3)
Spectrum_1.1.tgz(r-4.4-any)Spectrum_1.1.tgz(r-4.3-any)
Spectrum_1.1.tar.gz(r-4.5-noble)Spectrum_1.1.tar.gz(r-4.4-noble)
Spectrum_1.1.tgz(r-4.4-emscripten)Spectrum_1.1.tgz(r-4.3-emscripten)
Spectrum.pdf |Spectrum.html✨
Spectrum/json (API)
# Install 'Spectrum' in R: |
install.packages('Spectrum', repos = c('https://crj32.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/crj32/spectrum/issues
- blobs - 8 blob like structures
- brain - A brain cancer dataset
- circles - Three concentric circles
- missl - A list of the blob data as similarity matrices with a missing entry in one
- misslfilled - A list of the blob data as similarity matrices with a missing entry in one filled with NAs
- spirals - Two spirals wrapped around one another
Last updated 5 years agofrom:92c21c8162. Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 20 2024 |
R-4.5-win | WARNING | Nov 20 2024 |
R-4.5-linux | WARNING | Nov 20 2024 |
R-4.4-win | WARNING | Nov 20 2024 |
R-4.4-mac | WARNING | Nov 20 2024 |
R-4.3-win | WARNING | Nov 20 2024 |
R-4.3-mac | WARNING | Nov 20 2024 |
Exports:cluster_similarityCNN_kernelestimate_kharmonise_idsintegrate_similarity_matriceskernel_pcamean_imputationng_kernelpcarbfkernel_bsigma_finderSpectrum
Dependencies:cliClusterRcolorspacediptestfansifarverggplot2gluegmpgtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppArmadilloRcppGSLRcppParallelRcppZigguratRfastrlangscalestibbleutf8vctrsviridisLitewithr