Package: Spectrum 1.1

Spectrum: Fast Adaptive Spectral Clustering for Single and Multi-View Data

A self-tuning spectral clustering method for single or multi-view data. 'Spectrum' uses a new type of adaptive density aware kernel that strengthens connections in the graph based on common nearest neighbours. It uses a tensor product graph data integration and diffusion procedure to integrate different data sources and reduce noise. 'Spectrum' uses either the eigengap or multimodality gap heuristics to determine the number of clusters. The method is sufficiently flexible so that a wide range of Gaussian and non-Gaussian structures can be clustered with automatic selection of K.

Authors:Christopher R John, David Watson

Spectrum_1.1.tar.gz
Spectrum_1.1.zip(r-4.5)Spectrum_1.1.zip(r-4.4)Spectrum_1.1.zip(r-4.3)
Spectrum_1.1.tgz(r-4.4-any)Spectrum_1.1.tgz(r-4.3-any)
Spectrum_1.1.tar.gz(r-4.5-noble)Spectrum_1.1.tar.gz(r-4.4-noble)
Spectrum_1.1.tgz(r-4.4-emscripten)Spectrum_1.1.tgz(r-4.3-emscripten)
Spectrum.pdf |Spectrum.html
Spectrum/json (API)

# Install 'Spectrum' in R:
install.packages('Spectrum', repos = c('https://crj32.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/crj32/spectrum/issues

Datasets:
  • blobs - 8 blob like structures
  • brain - A brain cancer dataset
  • circles - Three concentric circles
  • missl - A list of the blob data as similarity matrices with a missing entry in one
  • misslfilled - A list of the blob data as similarity matrices with a missing entry in one filled with NAs
  • spirals - Two spirals wrapped around one another

On CRAN:

clusteringspectral-clustering

5.99 score 7 stars 1 packages 47 scripts 445 downloads 450 mentions 12 exports 37 dependencies

Last updated 5 years agofrom:92c21c8162. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 20 2024
R-4.5-winWARNINGNov 20 2024
R-4.5-linuxWARNINGNov 20 2024
R-4.4-winWARNINGNov 20 2024
R-4.4-macWARNINGNov 20 2024
R-4.3-winWARNINGNov 20 2024
R-4.3-macWARNINGNov 20 2024

Exports:cluster_similarityCNN_kernelestimate_kharmonise_idsintegrate_similarity_matriceskernel_pcamean_imputationng_kernelpcarbfkernel_bsigma_finderSpectrum

Dependencies:cliClusterRcolorspacediptestfansifarverggplot2gluegmpgtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppArmadilloRcppGSLRcppParallelRcppZigguratRfastrlangscalestibbleutf8vctrsviridisLitewithr

Spectrum

Rendered fromSpectrum_vignette.Rmdusingknitr::rmarkdownon Nov 20 2024.

Last update: 2020-02-12
Started: 2020-02-12